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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class LumpySv(MakefilePackage):
"""A probabilistic framework for structural variant discovery."""
homepage = "https://github.com/arq5x/lumpy-sv"
url = "https://github.com/arq5x/lumpy-sv/archive/0.2.13.tar.gz"
version('0.2.13', '36929d29fc3a171d3abbe1d93f9f3b50')
depends_on('htslib')
def edit(self, spec, prefix):
makefile = FileFilter('Makefile')
makefile.filter('export CXX .*', '')
def install(self, spec, prefix):
install_tree('bin', prefix.bin)
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