var/spack/repos/builtin/packages/manta/package.py


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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class Manta(CMakePackage):
    """Structural variant and indel caller for mapped sequencing data"""

    homepage = "https://github.com/Illumina/manta"
    url = "https://github.com/Illumina/manta/releases/download/v1.3.2/manta-1.3.2.release_src.tar.bz2"

    version("1.6.0", sha256="c846d61b02483265c09d58bd85dacf5326a94f38179b5ae4f70694be96e1368f")
    version("1.5.0", sha256="9aa1a59c9cb8d2dd33724a42959c9398aff7840c5bf3c895d2483a8093b3d2dc")
    version("1.4.0", sha256="4f8f827485e3ad9a12318bfcbf62fa622263378767514eb938bc02ad5ad74f10")
    version("1.3.2", sha256="eb346d1a44aff1180732dcd03864b89efc1245652e1993107fb60da4ad739f79")
    version("1.3.1", sha256="9ba943623088e552a4b45bccea48125a0553905f4cc7ea86a9de567e155a5888")
    version("1.3.0", sha256="3db4b5475c33e3aeeb5435969c74364af9d2d77dd3bcf8dc70bf44a851e450dd")

    depends_on("cmake@2.8.12:", type="build")
    depends_on("python@2.7.0:2.7", type=("build", "run"))
    depends_on("zlib")

    patch("for_aarch64.patch", when="target=aarch64:")