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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Mash(AutotoolsPackage):
"""
Fast genome and metagenome distance estimation using MinHash.
"""
homepage = "https://mash.readthedocs.org/"
url = "https://github.com/marbl/Mash/archive/refs/tags/v2.3.tar.gz"
maintainers("marcusboden")
version("2.3", sha256="f96cf7305e010012c3debed966ac83ceecac0351dbbfeaa6cd7ad7f068d87fe1")
patch("gcc-11.patch", when="%gcc@11:")
depends_on("autoconf", type="build")
depends_on("automake", type="build")
depends_on("libtool", type="build")
depends_on("m4", type="build")
depends_on("capnproto")
depends_on("gsl")
def patch(self):
if self.spec.satisfies("target=aarch64:"):
filter_file(
"CXXFLAGS += -include src/mash/memcpyLink.h -Wl,--wrap=memcpy",
"",
"Makefile.in",
string=True,
)
filter_file("CFLAGS += -include src/mash/memcpyLink.h", "", "Makefile.in", string=True)
def configure_args(self):
args = []
args.append("--with-capnp=" + self.spec["capnproto"].prefix)
args.append("--with-gsl=" + self.spec["gsl"].prefix)
return args
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