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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Masurca(Package):
"""MaSuRCA is whole genome assembly software. It combines the efficiency
of the de Bruijn graph and Overlap-Layout-Consensus (OLC)
approaches."""
homepage = "http://www.genome.umd.edu/masurca.html"
url = "https://github.com/alekseyzimin/masurca/releases/download/v3.3.1/MaSuRCA-3.3.1.tar.gz"
version('3.3.1', sha256='587d0ee2c6b9fbd3436ca2a9001e19f251b677757fe5e88e7f94a0664231e020')
version('3.2.9', sha256='795ad4bd42e15cf3ef2e5329aa7e4f2cdeb7e186ce2e350a45127e319db2904b')
depends_on('perl', type=('build', 'run'))
depends_on('boost')
depends_on('zlib')
patch('arm.patch', when='target=aarch64:')
def patch(self):
if self.spec.target.family == 'aarch64':
for makefile in 'Makefile.am', 'Makefile.in':
m = join_path('global-1', 'prepare', makefile)
filter_file('-minline-all-stringops', '', m)
m = join_path('global-1', makefile)
filter_file('-minline-all-stringops', '', m)
def install(self, spec, prefix):
installer = Executable('./install.sh')
installer()
install_tree('.', prefix)
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