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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import distutils.dir_util
class Masurca(Package):
"""MaSuRCA is whole genome assembly software. It combines the efficiency
of the de Bruijn graph and Overlap-Layout-Consensus (OLC)
approaches."""
homepage = "http://www.genome.umd.edu/masurca.html"
url = "ftp://ftp.genome.umd.edu/pub/MaSuRCA/latest/MaSuRCA-3.2.3.tar.gz"
version('3.2.3', 'd9b4419adfe6b64e42ce986253a50ff5')
depends_on('perl', type=('build', 'run'))
depends_on('boost')
depends_on('zlib')
def install(self, spec, prefix):
installer = Executable('./install.sh')
installer()
distutils.dir_util.copy_tree(".", prefix)
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