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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Mefit(Package):
"""This pipeline will merge overlapping paired-end reads, calculate
merge statistics, and filter reads for quality."""
homepage = "https://github.com/nisheth/MeFiT"
git = "https://github.com/nisheth/MeFiT.git"
version('1.0', commit='0733326d8917570bbf70ff5c0f710bf66c13db09')
depends_on('py-numpy')
depends_on('py-htseq')
depends_on('jellyfish')
depends_on('casper %gcc@4.8.5')
def install(self, spec, prefix):
install_tree('.', prefix)
def setup_run_environment(self, env):
env.prepend_path('PATH', self.prefix)
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