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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Meme(AutotoolsPackage):
"""The MEME Suite allows the biologist to discover novel motifs in
collections of unaligned nucleotide or protein sequences, and to perform a
wide variety of other motif-based analyses."""
homepage = "http://meme-suite.org"
url = "http://meme-suite.org/meme-software/4.11.4/meme_4.11.4.tar.gz"
version('4.12.0', '40d282cc33f7dedb06b24b9f34ac15c1')
version('4.11.4', '371f513f82fa0888205748e333003897')
variant('mpi', default=True, description='Enable MPI support')
variant('image-magick', default=False, description='Enable image-magick for png output')
depends_on('zlib', type=('link'))
depends_on('libgcrypt', type=('link'))
depends_on('perl', type=('build', 'run'))
depends_on('python@2.7:', type=('build', 'run'))
depends_on('mpi', when='+mpi')
depends_on('image-magick', type=('build', 'run'), when='+image-magick')
depends_on('perl-xml-parser', type=('build', 'run'))
def configure_args(self):
spec = self.spec
# have meme build its own versions of libxml2/libxslt, see #6736
args = ['--enable-build-libxml2', '--enable-build-libxslt']
if '~mpi' in spec:
args += ['--enable-serial']
return args
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