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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Microbiomeutil(MakefilePackage, SourceforgePackage):
"""Microbiome analysis utilities"""
homepage = "http://microbiomeutil.sourceforge.net/"
sourceforge_mirror_path = "microbiomeutil/microbiomeutil-r20110519.tgz"
version("20110519", sha256="9233de80ea57bfb9e9371cbe7e3bfad2d4a51168fddaf60fa144c4046c80d823")
depends_on("perl", type=("build", "run"))
depends_on("blast-plus")
depends_on("cdbfasta")
def install(self, spec, prefix):
install_tree("ChimeraSlayer", prefix.ChimeraSlayer)
install_tree("NAST-iEr", join_path(prefix, "NAST-iEr"))
install_tree("TreeChopper", prefix.TreeChopper)
install_tree("WigeoN", prefix.WigeoN)
install_tree("docs", prefix.docs)
install_tree("RESOURCES", prefix.resources)
install_tree("AmosCmp16Spipeline", prefix.AmosCmp16Spipeline)
def setup_run_environment(self, env):
env.prepend_path("PATH", self.prefix.ChimeraSlayer)
env.prepend_path("PATH", join_path(self.prefix, "NAST-iEr"))
env.prepend_path("PATH", self.prefix.TreeChopper)
env.prepend_path("PATH", self.prefix.WigeoN)
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