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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Microbiomeutil(MakefilePackage, SourceforgePackage):
"""Microbiome analysis utilities"""
homepage = "http://microbiomeutil.sourceforge.net/"
sourceforge_mirror_path = "microbiomeutil/microbiomeutil-r20110519.tgz"
version('20110519', sha256='9233de80ea57bfb9e9371cbe7e3bfad2d4a51168fddaf60fa144c4046c80d823')
depends_on('perl', type=('build', 'run'))
depends_on('blast-plus')
depends_on('cdbfasta')
def install(self, spec, prefix):
install_tree('ChimeraSlayer', prefix.ChimeraSlayer)
install_tree('NAST-iEr', join_path(prefix, 'NAST-iEr'))
install_tree('TreeChopper', prefix.TreeChopper)
install_tree('WigeoN', prefix.WigeoN)
install_tree('docs', prefix.docs)
install_tree('RESOURCES', prefix.resources)
install_tree('AmosCmp16Spipeline', prefix.AmosCmp16Spipeline)
def setup_run_environment(self, env):
env.prepend_path('PATH', self.prefix.ChimeraSlayer)
env.prepend_path('PATH', join_path(self.prefix, 'NAST-iEr'))
env.prepend_path('PATH', self.prefix.TreeChopper)
env.prepend_path('PATH', self.prefix.WigeoN)
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