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##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
from glob import glob
class Motioncor2(Package):
"""MotionCor2 is a multi-GPU program that corrects beam-induced sample
motion recorded on dose fractionated movie stacks. It implements a robust
iterative alignment algorithm that delivers precise measurement and
correction of both global and non-uniform local motions at
single pixel level, suitable for both single-particle and
tomographic images. MotionCor2 is sufficiently fast
to keep up with automated data collection."""
homepage = "http://msg.ucsf.edu/em/software"
url = "http://msg.ucsf.edu/MotionCor2/MotionCor2-1.1.0.zip"
version('1.1.0',
'6e37e7ed63a9f0aab5d794b2604d5ba79333960bb9440a1a218630b03dbeaeac')
version('1.0.5',
'4efa55af25644bcff1ca7882419267b8c094c9cc6155b37d2c204b154c56f5a8',
url='http://msg.ucsf.edu/MotionCor2/MotionCor2-1.0.5.tar.gz')
version('1.0.4',
'c75738160ac18d3f27c33677e78e63313d8ec2b023b5a46173428c3fa0451a94',
url='http://msg.ucsf.edu/MotionCor2/MotionCor2-1.0.4.tar.gz')
depends_on('cuda@8.0:8.99', type='run')
# libtiff.so.3 is required
depends_on('libtiff@3.0:3.99', type='run')
def install(self, spec, prefix):
mkdirp(prefix.bin)
for files in glob("MotionCor2_*"):
install(files, prefix.bin)
with working_dir(prefix.bin):
symlink('MotionCor2_{0}'.format(spec.version), 'MotionCor2')
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