1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
|
##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Mpiblast(AutotoolsPackage):
"""mpiBLAST is a freely available, open-source, parallel implementation of
NCBI BLAST"""
homepage = "http://www.mpiblast.org/"
url = "http://www.mpiblast.org/downloads/files/mpiBLAST-1.6.0.tgz"
version('1.6.0', '707105ccd56825db776b50bfd81cecd5')
patch('mpiBLAST-1.6.0-patch-110806')
depends_on('mpi')
def configure_args(self):
args = ['--with-mpi=%s' % self.spec['mpi'].prefix]
return args
def build(self, spec, prefix):
make('ncbi')
make()
def setup_environment(self, spack_env, run_env):
spack_env.set('ac_cv_path_CC', self.spec['mpi'].mpicc)
spack_env.set('ac_cv_path_CXX', self.spec['mpi'].mpicxx)
|
