1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
|
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Msmc(MakefilePackage):
"""This software implements MSMC, a method to infer population size
and gene flow from multiple genome sequences"""
homepage = "https://github.com/stschiff/msmc"
url = "https://github.com/stschiff/msmc/archive/v1.1.0.tar.gz"
license("GPL-3.0-or-later")
version("1.1.0", sha256="989064400fe392ca3d2ac1a253ce7edf1801b6a7eeb77bbf2ff7bf67910216c4")
depends_on("gsl", type=("build", "run"))
depends_on("dmd", type="build")
def edit(self, spec, prefix):
filter_file(
"dmd", join_path(self.spec["dmd"].prefix.linux.bin64, "dmd"), "Makefile", string=True
)
def build(self, spec, prefix):
gsllibdir = self.spec["gsl"].prefix.lib
libgsl = join_path(gsllibdir, "libgsl.a")
libgslcblas = join_path(gsllibdir, "libgslcblas.a")
make("GSL={0} {1}".format(libgsl, libgslcblas))
def install(self, spec, prefix):
mkdirp(prefix.bin)
install_tree("build", prefix.bin)
|
