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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Msmc2(MakefilePackage):
"""
This program implements MSMC2, a method to infer population size history
and population separation history from whole genome sequencing data.
"""
homepage = "https://github.com/stschiff/msmc2"
url = "https://github.com/stschiff/msmc2/archive/v2.1.1.tar.gz"
maintainers = ['robqiao']
version('2.1.2', sha256='c8c2b6ed6ef1b5d6e6e15ec0d968288e5bdae2bea1f3b4ec790f599e96bb26cd')
version('2.1.1', sha256='151dd75a8b0371ff94eed9504a7a73a2924e10466de30c230c1bb3c35a1a0913')
version('2.0.2', sha256='91152b2494342148ff84a1e5c6d2f5f0d53acba12722cd68ff5807ba4e82af55')
version('2.0.1', sha256='97e859e6f08689baf29d3c61b6904cfa5a292f8ce7b3532e055ce3047d8472f4')
version('2.0.0', sha256='9de38239f6e729a0f6f492ca671e2e70541eb5db558d816e64184c06611a1c7e')
depends_on('gsl', type=('build', 'run'))
depends_on('dmd@:2.081.0', type='build')
def edit(self, spec, prefix):
# Set DMD compiler
filter_file('dmd',
join_path(self.spec['dmd'].prefix.linux.bin64, 'dmd'),
'Makefile', string=True)
gsllibdir = spec['gsl'].libs.directories[0]
# Set GSLDIR
filter_file('GSLDIR=/usr/local/lib',
'GSLDIR={0}'.format(gsllibdir),
'Makefile', string=True)
def install(self, spec, prefix):
install_tree('build/release', prefix.bin)
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