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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Muscle(MakefilePackage):
"""MUSCLE is one of the best-performing multiple alignment programs
according to published benchmark tests, with accuracy and speed
that are consistently better than CLUSTALW."""
homepage = "http://drive5.com/muscle/"
url = "http://www.drive5.com/muscle/muscle_src_3.8.1551.tar.gz"
version('3.8.1551', '1b7c9661f275a82d3cf708f923736bf8')
def edit(self, spec, prefix):
makefile = FileFilter('Makefile')
makefile.filter('-static', '')
makefile.filter('-funroll-loops', '')
def install(self, spec, prefix):
mkdirp(prefix.bin)
install('muscle', prefix.bin)
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