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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
from shutil import copyfile
import os
class Nek5000(Package):
"""A fast and scalable high-order solver for computational fluid
dynamics"""
homepage = "https://nek5000.mcs.anl.gov/"
url = 'https://github.com/Nek5000/Nek5000/archive/v17.0.tar.gz'
git = "https://github.com/Nek5000/Nek5000.git"
tags = ['cfd', 'flow', 'hpc', 'solver', 'navier-stokes',
'spectral-elements', 'fluid', 'ecp', 'ecp-apps']
version('develop', branch='master')
version('17.0',
'4d8d4793ce3c926c54e09a5a5968fa959fe0ba46bd2e6b8043e099528ee35a60')
version('19.0',
'db129877a10ff568d49edc77cf65f9e732eecb1fce10edbd91ffc5ac10c41ad6')
# MPI, Profiling and Visit variants
variant('mpi', default=True, description='Build with MPI.')
variant('profiling', default=True, description='Build with profiling data.')
variant('visit', default=False, description='Build with Visit.')
# TODO: add a variant 'blas' or 'external-blas' to enable the usage of
# Spack installed/configured blas.
# Dependencies
depends_on('mpi', when="+mpi")
patch('add_fjfortran.patch', when='%fj')
@run_before('install')
def fortran_check(self):
if not self.compiler.f77:
msg = 'Cannot build Nek5000 without a Fortran 77 compiler.'
raise RuntimeError(msg)
@run_after('install')
def test_install(self):
with working_dir('short_tests/eddy'):
f_size = join_path(os.getcwd(), 'SIZE')
f_size_legacy = join_path(os.getcwd(), 'SIZE.legacy')
if not os.access(f_size, os.F_OK):
if os.access(f_size_legacy, os.F_OK):
copyfile(f_size_legacy, f_size)
else:
raise RuntimeError('Can not find {0}'.format(f_size))
os.system(join_path(self.prefix.bin, 'makenek') + ' eddy_uv')
if not os.path.isfile(join_path(os.getcwd(), 'nek5000')):
msg = 'Cannot build example: short_tests/eddy.'
raise RuntimeError(msg)
def install(self, spec, prefix):
bin_dir = 'bin'
# Do not use the Spack compiler wrappers.
# Use directly the compilers:
fc = self.compiler.f77
cc = self.compiler.cc
fflags = spec.compiler_flags['fflags']
cflags = spec.compiler_flags['cflags']
if self.compiler.name in ['xl', 'xl_r']:
# Use '-qextname' to add underscores.
# Use '-WF,-qnotrigraph' to fix an error about a string: '... ??'
fflags += ['-qextname', '-WF,-qnotrigraph']
error = Executable(fc)('empty.f', output=str, error=str,
fail_on_error=False)
if 'gfortran' in error or 'GNU' in error or 'gfortran' in fc:
# Use '-std=legacy' to suppress an error that used to be a
# warning in previous versions of gfortran.
fflags += ['-std=legacy']
fflags = ' '.join(fflags)
cflags = ' '.join(cflags)
with working_dir(bin_dir):
if '+mpi' in spec:
fc = spec['mpi'].mpif77
cc = spec['mpi'].mpicc
else:
filter_file(r'^#MPI=0', 'MPI=0', 'makenek')
# Make sure nekmpi wrapper uses srun when we know OpenMPI
# is not built with mpiexec
if '^openmpi~legacylaunchers' in spec:
filter_file(r'mpiexec -np', 'srun -n', 'nekmpi')
if '+profiling' not in spec:
filter_file(r'^#PROFILING=0', 'PROFILING=0', 'makenek')
if '+visit' in spec:
filter_file(r'^#VISIT=1', 'VISIT=1', 'makenek')
filter_file(r'^#VISIT_INSTALL=.*', 'VISIT_INSTALL=\"' +
spec['visit'].prefix.bin + '\"', 'makenek')
# Update the makenek to use correct compilers and
# Nek5000 source.
filter_file(r'^#FC\s*=.*', 'FC="{0}"'.format(fc), 'makenek')
filter_file(r'^#CC\s*=.*', 'CC="{0}"'.format(cc), 'makenek')
if self.spec.version == Version('17.0'):
filter_file(r'^#SOURCE_ROOT\s*=\"\$H.*', 'SOURCE_ROOT=\"' +
prefix.bin.Nek5000 + '\"', 'makenek')
else:
filter_file(r'^#NEK_SOURCE_ROOT\s*=\"\$H.*',
'NEK_SOURCE_ROOT=\"' + prefix.bin.Nek5000 + '\"',
'makenek')
if fflags:
filter_file(r'^#FFLAGS=.*', 'FFLAGS+=" {0}"'.format(fflags),
'makenek')
if cflags:
filter_file(r'^#CFLAGS=.*', 'CFLAGS+=" {0}"'.format(cflags),
'makenek')
with working_dir('core'):
if self.compiler.name in ['xl', 'xl_r']:
# Patch 'core/makenek.inc' and 'makefile.template' to use
# '-qextname' when checking for underscore becasue 'xl'/'xl_r'
# use this option to enable the addition of the underscore.
filter_file(r'^\$FCcomp -c ', '$FCcomp -qextname -c ',
'makenek.inc')
filter_file(r'\$\(FC\) -c \$\(L0\)',
'$(FC) -c -qextname $(L0)', 'makefile.template')
# Install Nek5000/bin in prefix/bin
install_tree(bin_dir, prefix.bin)
# Copy Nek5000 source to prefix/bin
install_tree(self.stage.source_path, prefix.bin.Nek5000)
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