1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
|
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class OntAlbacore(Package):
"""Albacore is a software project that provides an entry point to the Oxford
Nanopore basecalling algorithms. It can be run from the command line on
Windows and multiple Linux platforms. A selection of configuration files
allow basecalling DNA libraries made with our current range of sequencing
kits and Flow Cells."""
homepage = "https://nanoporetech.com"
url = "https://mirror.oxfordnanoportal.com/software/analysis/ont_albacore-2.3.1-cp35-cp35m-manylinux1_x86_64.whl"
version('2.3.1', '0e85ad176e691252344c4c4b673c4b68', expand=False)
version('2.1.2', '1e60cfb95628829f2a61a85247f1b6af', expand=False)
version('1.2.4', '559640bec4693af12e4d923e8d77adf6', expand=False)
version('1.1.0', 'fab4502ea1bad99d813aa2629e03e83d', expand=False)
extends('python')
depends_on('python@3.5.0:3.5.999', type=('build', 'run'))
depends_on('py-setuptools', type=('build', 'run'))
depends_on('py-numpy@1.13.0', type=('build', 'run'))
depends_on('py-dateutil', type=('build', 'run'))
depends_on('py-h5py', type=('build', 'run'))
depends_on('py-ont-fast5-api', type=('build', 'run'))
depends_on('py-pip', type=('build'))
def install(self, spec, prefix):
pip = which('pip')
pip('install', self.stage.archive_file, '--prefix={0}'.format(prefix))
|
