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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class OpenpmdApi(CMakePackage):
"""C++ & Python API for Scientific I/O"""
homepage = "https://www.openPMD.org"
url = "https://github.com/openPMD/openPMD-api/archive/0.14.2.tar.gz"
git = "https://github.com/openPMD/openPMD-api.git"
maintainers = ['ax3l']
# C++14 up until here
version('develop', branch='dev')
version('0.14.2', sha256='25c6b4bcd0ae1ba668b633b8514e66c402da54901c26861fc754fca55717c836')
version('0.14.1', sha256='172fd1d785627d01c77f1170adc5a18bd8a6302e804d0f271dc0d616a5156791')
version('0.14.0', sha256='7bb561c1a6f54e9a6a1b56aaf1d4d098bbe290d204f84ebe5a6f11b3cab2be6e')
version('0.13.4', sha256='46c013be5cda670f21969675ce839315d4f5ada0406a6546a91ec3441402cf5e')
version('0.13.3', sha256='4b8f84bd89cd540c73ffe8c21085970453cb7f0e4f125f11a4e288433f64b58c')
version('0.13.2', sha256='2e5170d41bb7b2c0608ec833eee7f9adf8175b46734743f6e46dcce6f6685fb0')
version('0.13.1', sha256='81ff79419982eb1b0865d1736f73f950f5d4c356d3c78200ceeab7f54dc07fd7')
version('0.13.0', sha256='97c2e43d80ee5c5288f278bd54f0dcb40e7f48a575b278fcef9660214b779bb0')
# C++11 up until here
version('0.12.0', tag='0.12.0-alpha')
version('0.11.1', tag='0.11.1-alpha')
variant('shared', default=True,
description='Build a shared version of the library')
variant('mpi', default=True,
description='Enable parallel I/O')
variant('hdf5', default=True,
description='Enable HDF5 support')
variant('adios1', default=False,
description='Enable ADIOS1 support')
variant('adios2', default=True,
description='Enable ADIOS2 support')
variant('python', default=False,
description='Enable Python bindings')
depends_on('cmake@3.15.0:', type='build')
depends_on('mpark-variant@1.4.0:')
depends_on('catch2@2.6.1:', type='test')
depends_on('catch2@2.13.4:', type='test', when='@0.14.0:')
depends_on('mpi@2.3:', when='+mpi') # might become MPI 3.0+
depends_on('nlohmann-json@3.9.1:')
with when('+hdf5'):
depends_on('hdf5@1.8.13:')
depends_on('hdf5@1.8.13: ~mpi', when='~mpi')
depends_on('hdf5@1.8.13: +mpi', when='+mpi')
with when('+adios1'):
depends_on('adios@1.13.1: ~sz')
depends_on('adios@1.13.1: ~mpi ~sz', when='~mpi')
depends_on('adios@1.13.1: +mpi ~sz', when='+mpi')
with when('+adios2'):
depends_on('adios2@2.5.0:')
depends_on('adios2@2.6.0:', when='@0.12.0:')
depends_on('adios2@2.7.0:', when='@0.14.0:')
depends_on('adios2@2.5.0: ~mpi', when='~mpi')
depends_on('adios2@2.5.0: +mpi', when='+mpi')
with when('+python'):
depends_on('py-pybind11@2.6.2:', type='link')
depends_on('py-numpy@1.15.1:', type=['test', 'run'])
depends_on('py-mpi4py@2.1.0:', when='+mpi', type=['test', 'run'])
depends_on('python@3.6:', type=['link', 'test', 'run'])
conflicts('^hdf5 api=v16', msg='openPMD-api requires HDF5 APIs for 1.8+')
# Fix breaking HDF5 1.12.0 API when build with legacy api options
# https://github.com/openPMD/openPMD-api/pull/1012
patch('hdf5-1.12.0.patch', when='@:0.13.99 +hdf5')
extends('python', when='+python')
def cmake_args(self):
spec = self.spec
args = [
self.define_from_variant('BUILD_SHARED_LIBS', 'shared'),
# variants
self.define_from_variant('openPMD_USE_MPI', 'mpi'),
self.define_from_variant('openPMD_USE_HDF5', 'hdf5'),
self.define_from_variant('openPMD_USE_ADIOS1', 'adios1'),
self.define_from_variant('openPMD_USE_ADIOS2', 'adios2'),
self.define_from_variant('openPMD_USE_PYTHON', 'python'),
# tests and examples
self.define('BUILD_TESTING', self.run_tests),
self.define('BUILD_EXAMPLES', self.run_tests)
]
# switch internally shipped third-party libraries for spack
if spec.satisfies('+python'):
py_exe_define = 'Python_EXECUTABLE' \
if spec.version >= Version('0.13.0') else 'PYTHON_EXECUTABLE'
args += [
self.define(py_exe_define, self.spec['python'].command.path),
self.define('openPMD_USE_INTERNAL_PYBIND11', False)
]
args += [
self.define('openPMD_USE_INTERNAL_JSON', False),
self.define('openPMD_USE_INTERNAL_VARIANT', False)
]
if self.run_tests:
args.append(self.define('openPMD_USE_INTERNAL_CATCH', False))
return args
def setup_run_environment(self, env):
spec = self.spec
# pre-load dependent CMake-PUBLIC header-only libs
env.prepend_path('CMAKE_PREFIX_PATH', spec['mpark-variant'].prefix)
env.prepend_path('CPATH', spec['mpark-variant'].prefix.include)
# more deps searched in openPMDConfig.cmake
if spec.satisfies("+mpi"):
env.prepend_path('CMAKE_PREFIX_PATH', spec['mpi'].prefix)
if spec.satisfies("+adios1"):
env.prepend_path('CMAKE_PREFIX_PATH', spec['adios'].prefix)
env.prepend_path('PATH', spec['adios'].prefix.bin) # adios-config
if spec.satisfies("+adios2"):
env.prepend_path('CMAKE_PREFIX_PATH', spec['adios2'].prefix)
if spec.satisfies("+hdf5"):
env.prepend_path('CMAKE_PREFIX_PATH', spec['hdf5'].prefix)
def setup_dependent_build_environment(self, env, dependent_spec):
# pre-load dependent CMake-PUBLIC header-only libs
env.prepend_path('CMAKE_PREFIX_PATH',
self.spec['mpark-variant'].prefix)
env.prepend_path('CPATH', self.spec['mpark-variant'].prefix.include)
def check(self):
"""CTest checks after the build phase"""
# note: for MPI-parallel tests, you can overwrite the standard CMake
# option -DMPIEXEC_EXECUTABLE=$(which jsrun) for jsrun or srun,
# etc.. Alternatively, you can also use -E <regex> to exclude
# parallel and MPI tests
with working_dir(self.build_directory):
# -j1 because individual tests create files that are read again by
# later tests
ctest('--output-on-failure', '-j1')
def test(self):
"""Perform smoke tests on the installed package."""
exes = ['openpmd-ls'] # in 0.11.1+
for exe in exes:
spec_vers_str = '{0}'.format(self.spec.version)
reason = 'test version of {0} is {1}'.format(exe, spec_vers_str)
self.run_test(exe, ['--version'], [spec_vers_str],
installed=True, purpose=reason, skip_missing=False)
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