blob: 41badd0f3b786a2e29dd13b6d2683f03e6fb8b6c (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
|
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Orthomcl(Package):
"""OrthoMCL is a genome-scale algorithm for grouping orthologous protein
sequences."""
homepage = "http://orthomcl.org/orthomcl/"
url = "http://orthomcl.org/common/downloads/software/v2.0/orthomclSoftware-v2.0.9.tar.gz"
version('2.0.9', '2e0202ed4e36a753752c3567edb9bba9')
depends_on('perl', type=('build', 'run'))
depends_on('blast-plus')
depends_on('mcl')
depends_on('mariadb')
def install(self, spec, prefix):
install_tree('bin', prefix.bin)
install_tree('config', prefix.config)
install_tree('doc', prefix.doc)
install_tree('lib', prefix.lib)
def setup_environment(self, spack_env, run_env):
run_env.prepend_path('PERL5LIB', self.prefix.lib)
|