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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class PacbioDazzDb(MakefilePackage):
"""The Dazzler Database Library. This version is a special fork
required for some pacbio utilities."""
homepage = "https://github.com/PacificBiosciences/DAZZ_DB"
url = "https://github.com/PacificBiosciences/DAZZ_DB"
version('2017-04-10',
git='https://github.com/PacificBiosciences/DAZZ_DB.git',
commit='f29d27d51f460563481cd227d17f4bdc5e288365')
depends_on('gmake', type='build')
def edit(self, spec, prefix):
mkdirp(prefix.bin)
mkdirp(prefix.lib)
mkdirp(prefix.include)
makefile = FileFilter('Makefile')
makefile.filter('DEST_DIR\s*=\s*~/bin', 'DEST_DIR = ' + prefix.bin)
gmf = FileFilter('GNUmakefile')
gmf.filter('rsync\s*-av\s*\$\{ALL\}\s*\$\{PREFIX\}/bin',
'cp ${ALL} ' + prefix.bin)
gmf.filter('rsync\s*-av\s*libdazzdb.*\s*\$\{PREFIX\}/lib',
'cp libdazzdb.* ' + prefix.lib)
gmf.filter(('rsync\s*-av\s*\$\(wildcard\s*\$\{THISDIR\}/\*.h'
'\)\s*\$\{PREFIX\}/include'),
'cp *.h ' + prefix.include)
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