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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PacbioDextractor(MakefilePackage):
"""The Dextractor and Compression Command Library. This is a special
fork required by some pacbio utilities."""
homepage = "https://github.com/PacificBiosciences/DEXTRACTOR"
git = "https://github.com/PacificBiosciences/DEXTRACTOR.git"
version('2016-08-09', commit='89726800346d0bed15d98dcc577f4c7733aab4b1')
depends_on('hdf5')
depends_on('gmake', type='build')
def edit(self, spec, prefix):
mkdirp(prefix.bin)
makefile = FileFilter('Makefile')
makefile.filter('PATH_HDF5\s*=\s*/sw/apps/hdf5/current',
'PATH_HDF5 = ' + spec['hdf5'].prefix)
makefile.filter('PATH_HDF5\*s=\s*/usr/local/hdf5', '')
makefile.filter('DEST_DIR\s*=\s*~/bin', 'DEST_DIR = ' + prefix.bin)
gmf = FileFilter('GNUmakefile')
gmf.filter('rsync\s*-av\s*\$\{ALL\}\s*\$\{PREFIX\}/bin',
'cp ${ALL} ' + prefix.bin)
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