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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Paml(MakefilePackage):
"""PAML is a package of programs for phylogenetic analyses of DNA or
protein sewuences using maximum likelihood."""
homepage = "http://abacus.gene.ucl.ac.uk/software/paml.html"
url = "http://abacus.gene.ucl.ac.uk/software/paml4.9h.tgz"
version('4.9h', sha256='623bf6cf4a018a4e7b4dbba189c41d6c0c25fdca3a0ae24703b82965c772edb3')
build_directory = 'src'
def install(self, spec, prefix):
mkdirp(prefix.bin)
with working_dir(self.build_directory):
install('baseml', prefix.bin)
install('basemlg', prefix.bin)
install('chi2', prefix.bin)
install('codeml', prefix.bin)
install('evolver', prefix.bin)
install('infinitesites', prefix.bin)
install('mcmctree', prefix.bin)
install('pamp', prefix.bin)
install('yn00', prefix.bin)
install_tree('dat', prefix.dat)
install_tree('Technical', prefix.Technical)
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