1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
|
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Paml(MakefilePackage):
"""PAML is a package of programs for phylogenetic analyses of DNA or
protein sewuences using maximum likelihood."""
homepage = "http://abacus.gene.ucl.ac.uk/software/paml.html"
url = "http://abacus.gene.ucl.ac.uk/software/paml4.9h.tgz"
version('4.9h', sha256='623bf6cf4a018a4e7b4dbba189c41d6c0c25fdca3a0ae24703b82965c772edb3')
build_directory = 'src'
def install(self, spec, prefix):
mkdirp(prefix.bin)
with working_dir(self.build_directory):
install('baseml', prefix.bin)
install('basemlg', prefix.bin)
install('chi2', prefix.bin)
install('codeml', prefix.bin)
install('evolver', prefix.bin)
install('infinitesites', prefix.bin)
install('mcmctree', prefix.bin)
install('pamp', prefix.bin)
install('yn00', prefix.bin)
install_tree('dat', prefix.dat)
install_tree('Technical', prefix.Technical)
|