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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Parsimonator(MakefilePackage):
"""Parsimonator is a no-frills light-weight implementation for building
starting trees under parsimony for RAxML"""
homepage = "http://www.exelixis-lab.org/"
git = "https://github.com/stamatak/Parsimonator-1.0.2.git"
version('1.0.2', commit='78368c6ab1e9adc7e9c6ec9256dd7ff2a5bb1b0a')
variant('sse', default=True, description='Enable SSE in order to substantially speed up execution')
variant('avx', default=False, description='Enable AVX in order to substantially speed up execution')
conflicts('+avx', when='+sse')
@property
def makefile_file(self):
if '+sse' in self.spec:
return 'Makefile.SSE3.gcc'
elif '+avx' in self.spec:
return 'Makefile.AVX.gcc'
else:
return 'Makefile.gcc'
def edit(self, spec, prefix):
makefile = FileFilter(self.makefile_file)
makefile.filter('CC = gcc', 'CC = %s' % spack_cc)
def build(self, spec, prefix):
make('-f', self.makefile_file)
def install(self, spec, prefix):
mkdirp(prefix.bin)
if '+sse' in spec:
install('parsimonator-SSE3', prefix.bin)
elif '+avx' in spec:
install('parsimonator-AVX', prefix.bin)
else:
install('parsimonator', prefix.bin)
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