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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Parsimonator(MakefilePackage):
"""Parsimonator is a no-frills light-weight implementation for building
starting trees under parsimony for RAxML"""
homepage = "http://www.exelixis-lab.org/"
url = "https://github.com/stamatak/Parsimonator-1.0.2"
version('1.0.2', git='https://github.com/stamatak/Parsimonator-1.0.2.git', commit='78368c6ab1e9adc7e9c6ec9256dd7ff2a5bb1b0a')
variant('sse', default=True, description='Enable SSE in order to substantially speed up execution')
variant('avx', default=False, description='Enable AVX in order to substantially speed up execution')
conflicts('+avx', when='+sse')
@property
def makefile_file(self):
if '+sse' in self.spec:
return 'Makefile.SSE3.gcc'
elif '+avx' in self.spec:
return 'Makefile.AVX.gcc'
else:
return 'Makefile.gcc'
def edit(self, spec, prefix):
makefile = FileFilter(self.makefile_file)
makefile.filter('CC = gcc', 'CC = %s' % spack_cc)
def build(self, spec, prefix):
make('-f', self.makefile_file)
def install(self, spec, prefix):
mkdirp(prefix.bin)
if '+sse' in spec:
install('parsimonator-SSE3', prefix.bin)
elif '+avx' in spec:
install('parsimonator-AVX', prefix.bin)
else:
install('parsimonator', prefix.bin)
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