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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Partitionfinder(Package):
"""PartitionFinder is free open source software to select best-fit
partitioning schemes and models of molecular evolution for
phylogenetic analyses."""
homepage = "https://github.com/brettc/partitionfinder"
url = "https://github.com/brettc/partitionfinder/archive/v2.1.1.tar.gz"
version('2.1.1', 'b1b6539f93146c69b967cf92459ae28a')
depends_on('python@2.7.10:2.999', type=('build', 'run'))
depends_on('py-numpy', type=('build', 'run'))
depends_on('py-pandas', type=('build', 'run'))
depends_on('py-pytables', type=('build', 'run'))
depends_on('py-pyparsing', type=('build', 'run'))
depends_on('py-scipy', type=('build', 'run'))
depends_on('py-scikit-learn', type=('build', 'run'))
def install(self, spec, prefix):
mkdirp(prefix.bin)
install_tree('partfinder', prefix.partfinder)
install_tree('timings', prefix.timings)
install('PartitionFinderMorphology.py', prefix.bin)
install('PartitionFinderProtein.py', prefix.bin)
install('PartitionFinder.py', prefix.bin)
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