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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Pasta(Package):
"""PASTA (Practical Alignment using SATe and Transitivity)"""
homepage = "https://github.com/smirarab/pasta"
git = "https://github.com/smirarab/pasta"
version('1.8.3', commit='738bec5e0d5a18d013c193d7453374bed47456c9')
depends_on('python@2.7:')
depends_on('py-dendropy')
depends_on('java')
resource(
name='tools',
git='https://github.com/smirarab/sate-tools-linux',
commit='90fb074d61af554e94d1a67583dd3a80b11417ea',
destination='.'
)
def setup_build_environment(self, env):
tools = join_path(self.prefix, 'sate-tools-linux')
env.set('PASTA_TOOLS_DEVDIR', tools)
def install(self, spec, prefix):
# build process for pasta is very hacky -- uses hard links to source
# install the tree first so links don't break
install_tree('.', prefix)
# run the 'build' from within the prefix
python = which('python2.7')
with working_dir(prefix):
python('setup.py', 'develop')
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