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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Phantompeakqualtools(RPackage):
"""This package computes informative enrichment and quality measures for
ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data."""
homepage = "https://github.com/kundajelab/phantompeakqualtools"
url = "https://github.com/kundajelab/phantompeakqualtools/archive/1.2.tar.gz"
version('1.2', 'e94943a42132b9ff2886f006ab34c121')
depends_on('awk')
depends_on('samtools')
depends_on('r', type=('build', 'run'))
depends_on('r-phantompeakqualtools', type=('build', 'run'))
def install(self, spec, prefix):
mkdirp(prefix.bin)
install('run_spp.R', prefix.bin)
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