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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
from spack.package import *
class PhrapCrossmatchSwat(MakefilePackage):
"""phrap is a program for assembling shotgun DNA sequence data.
cross_match is a general purpose utility for comparing any two DNA
sequence sets using a 'banded' version of swat.
swat is a program for searching one or more DNA or protein query
sequences, or a query profile, against a sequence database"""
homepage = "http://www.phrap.org/phredphrapconsed.html"
url = "file://{0}/phrap-crossmatch-swat-1.090518.tar.gz".format(os.getcwd())
manual_download = True
version("1.090518", sha256="81f50c4410e8604cdefcc34ef6dc7b037be3bb45b94c439611a5590c1cf83665")
def install(self, spec, prefix):
mkdirp(prefix.bin)
for b in ["phrap", "cross_match", "swat"]:
install(b, prefix.bin)
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