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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Phylip(Package):
"""PHYLIP (the PHYLogeny Inference Package) is a package of programs for
inferring phylogenies (evolutionary trees)."""
homepage = "https://evolution.genetics.washington.edu/phylip/"
url = "https://evolution.gs.washington.edu/phylip/download/phylip-3.697.tar.gz"
maintainers("snehring")
version("3.697", sha256="9a26d8b08b8afea7f708509ef41df484003101eaf4beceb5cf7851eb940510c1")
def patch(self):
with working_dir("src"):
for f in ["Makefile.unx", "Makefile.osx"]:
filter_file(r"CC\s*= gcc", "", f)
filter_file(r"CFLAGS\s*=.*$", "", f)
def flag_handler(self, name, flags):
if (
self.spec.satisfies("%gcc@10:") or self.spec.satisfies("%clang@11:")
) and name.lower() == "cflags":
flags.append("-fcommon")
if self.spec.satisfies("platform=darwin") and name.lower() == "cflags":
flags.append("-DMACOS10")
return (None, flags, None)
def install(self, spec, prefix):
with working_dir("src"):
if self.spec.satisfies("platform=darwin"):
make("all", "-f", "Makefile.osx")
make("put", "-f", "Makefile.osx")
else:
make("all", "-f", "Makefile.unx")
make("put", "-f", "Makefile.unx")
install_tree("exe", prefix.bin)
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