1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
|
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Phyluce(PythonPackage):
"""phyluce (phy-loo-chee) is a software package that was initially
developed for analyzing data collected from ultraconserved
elements in organismal genomes"""
homepage = "https://github.com/faircloth-lab/phyluce"
url = "https://github.com/faircloth-lab/phyluce/archive/v1.6.7.tar.gz"
version('1.6.7', sha256='98c213ab1610506722ad1440ffc93f9cbc78d8b3aaf3d9a47837e1231452cdb6')
extends('python')
depends_on('python@2.7:', type=('build', 'run'))
depends_on('py-setuptools', type=('build', 'run'))
depends_on('py-biopython', type='run')
# runtime binary dependencies
depends_on('abyss', type='run')
depends_on('bcftools', type='run')
depends_on('bwa', type='run')
depends_on('gatk', type='run')
depends_on('gblocks', type='run')
depends_on('lastz', type='run')
depends_on('mafft', type='run')
depends_on('muscle', type='run')
depends_on('picard', type='run')
depends_on('raxml+pthreads', type='run')
depends_on('samtools', type='run')
depends_on('seqtk', type='run')
depends_on('spades', type='run')
depends_on('trimal', type='run')
depends_on('trinity', type='run')
depends_on('velvet', type='run')
|