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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Pplacer(Package):
"""Pplacer places query sequences on a fixed reference phylogenetic tree
to maximize phylogenetic likelihood or posterior probability according
to a reference alignment. Pplacer is designed to be fast, to give
useful information about uncertainty, and to offer advanced
visualization and downstream analysis.
"""
homepage = "https://matsen.fhcrc.org/pplacer/"
url = "https://github.com/matsen/pplacer/releases/download/v1.1.alpha19/pplacer-linux-v1.1.alpha19.zip"
version(
"1.1.alpha19", sha256="9131b45c35ddb927f866385f149cf64af5dffe724234cd4548c22303a992347d"
)
def install(self, spec, prefix):
install_tree("scripts", prefix.bin)
force_remove(join_path(prefix.bin, "setup.py"))
install("guppy", prefix.bin)
install("pplacer", prefix.bin)
install("rppr", prefix.bin)
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