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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Preseq(MakefilePackage):
"""The preseq package is aimed at predicting and estimating the complexity
of a genomic sequencing library, equivalent to predicting and
estimating the number of redundant reads from a given sequencing depth
and how many will be expected from additional sequencing using an
initial sequencing experiment."""
homepage = "https://github.com/smithlabcode/preseq"
url = "https://github.com/smithlabcode/preseq/releases/download/v2.0.2/preseq_v2.0.2.tar.bz2"
version('2.0.2', '9f2a7b597c9f08b821db6ee55e2ea39c')
depends_on('samtools')
depends_on('gsl')
def setup_environment(self, spack_env, run_env):
spack_env.set('PREFIX', self.prefix)
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