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##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Psmc(MakefilePackage):
"""mplementation of the Pairwise Sequentially Markovian Coalescent
(PSMC) model"""
homepage = "https://github.com/lh3/psmc"
git = "https://github.com/lh3/psmc.git"
version('2016-1-21', commit='e5f7df5d00bb75ec603ae0beff62c0d7e37640b9')
def setup_environment(self, spack_env, run_env):
run_env.prepend_path('PATH', prefix.bin.utils)
def build(self, spec, prefix):
make()
with working_dir('utils'):
make()
def install(self, spec, prefix):
install_tree(self.build_directory, prefix.bin)
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