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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class PyBiomine(PythonPackage):
    """Bioinformatics data-mining."""

    homepage = "https://github.com/AdamDS/BioMine"
    url      = "https://github.com/AdamDS/BioMine/archive/v0.9.5.tar.gz"

    version('0.9.5', sha256='1b2a72cd2cb6e99d9b79fcc9ea94fa0e1892b02465620ba6bba59473dc7ff3ac')

    # pip silently replaces distutils with setuptools
    depends_on('py-setuptools', type='build')
    depends_on('py-advancedhtmlparser', type=('build', 'run'))
    depends_on('py-pysam', type=('build', 'run'))
    depends_on('py-pyvcf', type=('build', 'run'))
    depends_on('py-requests', type=('build', 'run'))