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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyBreakseq2(PythonPackage):
"""nucleotide-resolution analysis of structural variants"""
homepage = "https://bioinform.github.io/breakseq2/"
url = "https://github.com/bioinform/breakseq2/archive/2.2.tar.gz"
license("BSD-2-Clause")
version("2.2", sha256="d149e803191e6bb0b749abfba2c258716d94a38e942aaed40eb1630ae84f91ee")
depends_on("py-setuptools", type="build")
depends_on("py-biopython@1.65", type=("build", "run"))
depends_on("py-cython", type="build")
depends_on("py-pysam@0.7.7", type=("build", "run"))
depends_on("bwa", type="run")
depends_on("samtools", type="run")
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