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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyCheckmGenome(PythonPackage):
"""Assess the quality of microbial genomes recovered from isolates, single
cells, and metagenomes"""
homepage = "https://ecogenomics.github.io/CheckM"
pypi = "checkm-genome/checkm-genome-1.0.11.tar.gz"
version("1.0.13", sha256="ffb7e4966c0fac07c7e6e7db6f6eb5b48587fa83987f8a68efbaff2afb7da82e")
version("1.0.11", sha256="e475d9817d12fa771dbccc80f47758b742fc67c25261dc8ca0c0dc898c2a5190")
# pip silently replaces distutils with setuptools
depends_on("py-setuptools", type="build")
depends_on("hmmer@3.1b1:", type=("build", "run"))
depends_on("pplacer", type=("build", "run"))
depends_on("prodigal@2.6.1:", type=("build", "run"))
depends_on("python@2.7.0:2.7", type=("build", "run"))
depends_on("py-backports-functools-lru-cache", type=("build", "run"), when="^python@:3.2")
depends_on("py-numpy@1.8.0:", type=("build", "run"))
depends_on("py-scipy@0.9.0:", type=("build", "run"))
depends_on("py-matplotlib@1.3.1:2.2.3", type=("build", "run"))
depends_on("py-pysam@0.8.3:", type=("build", "run"))
depends_on("py-dendropy@4.0.0:", type=("build", "run"))
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