var/spack/repos/builtin/packages/py-cyvcf2/package.py


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25

# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class PyCyvcf2(PythonPackage):
    """fast vcf parsing with cython + htslib"""

    homepage = "https://github.com/brentp/cyvcf2"
    pypi = "cyvcf2/cyvcf2-0.11.7.tar.gz"

    version('0.11.7', sha256='a4b6229b89a0a1043684c65cbdd702c366a8800dc3591fb44c4b5a08640cbeec')

    depends_on('python@2.7:', type=('build', 'run'))
    depends_on('py-setuptools', type='build')

    depends_on('py-cython@0.23.3:', type='build')
    depends_on('py-numpy', type=('build', 'run'))
    depends_on('py-coloredlogs', type=('build', 'run'))
    depends_on('py-click', type=('build', 'run'))

    depends_on('curl')