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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyGemini(PythonPackage):
"""GEMINI (GEnome MINIng) is a flexible framework for exploring genetic
variation in the context of the wealth of genome annotations available
for the human genome.
"""
homepage = "https://gemini.readthedocs.org"
url = "https://github.com/arq5x/gemini/archive/v0.30.2.tar.gz"
maintainers = ["robqiao"]
version("0.30.2", sha256="c7af06a4cc475a846aeeb3cd7fcfb39d6cdd0b76e3b07abab2e5e6e68a3fe431")
version("0.30.1", sha256="af835ca33bc6d7865def2467c34cb1d539ec542f9514044435bd2252b25a046d")
version("0.30.0", sha256="a55d0c77342bf650f7e1300cb6ba485407ea3b42f4137a5197248d397a026030")
version("0.20.1", sha256="cd84aa45ace7a9ffb13ba4176122eab5b9fcc0445b1c0944ecec017f88f2b7f1")
version("0.20.0", sha256="640b40186fa00f54c1a0cdfab3fc3076b1d3bdf5c6327fcb2a0c51aa1b05878b")
version("0.19.1", sha256="1154bcb48b1bc78819c5a5e710f5cb0747b01fa0f3113e6081a5a2747c8703e5")
version("0.19.0", sha256="5146d1b5ed52139c50473aa3625d8df29f2db6d198cfd2c966469e7d585cccf2")
version("0.18.3", sha256="7c2f99069385547c656021fbb43e0bae4f9fb8a56ad3f6a61235b44fbc1ba6eb")
version("0.18.2", sha256="cf8a83d48d966a800aa2569076d52c307f4d8264a6ae804c176d61e705c0017e")
version("0.18.1", sha256="1d3d3b9d47555e1f62c1a870d8fd2ecbfc0bed25910cab31af5b585db3144a68")
depends_on("python@2.5:2.8", type=("build", "run"))
depends_on("py-setuptools", type="build")
depends_on("tabix", type=("build", "run"))
depends_on("grabix", type=("build", "run"))
depends_on("bedtools2", type=("build", "run"))
depends_on("py-numpy@1.7.1:", type=("build", "run"))
depends_on("py-inheritance@0.1.3:", type=("build", "run"))
depends_on("py-geneimpacts@0.1.3:", type=("build", "run"))
depends_on("py-cython@0.22.1:", type=("build", "run"))
depends_on("py-sqlalchemy@1:", type=("build", "run"))
depends_on("py-pysam@0.6:", type=("build", "run"))
depends_on("py-cyvcf2@0.7.2:", type=("build", "run"))
depends_on("py-pyyaml@3.10:", type=("build", "run"))
depends_on("py-pybedtools@0.6.2:", type=("build", "run"))
depends_on("py-jinja2@2.7.1:", type=("build", "run"))
depends_on("py-networkx@1.10:", type=("build", "run"))
depends_on("py-bottle@0.11.6:", type=("build", "run"))
depends_on("py-ipyparallel@4.0:", type=("build", "run"))
depends_on("py-ipython-cluster-helper@0.5.1:", type=("build", "run"))
depends_on("py-bx-python@0.7.1:", type=("build", "run"))
depends_on("py-pandas@0.11.0:", type=("build", "run"))
depends_on("py-openpyxl@1.6.1:1", type=("build", "run"))
depends_on("py-scipy@0.12.0:", type=("build", "run"))
depends_on("py-unidecode@0.04.14:", type=("build", "run"))
depends_on("py-cyordereddict@0.2.2", type=("build", "run"))
depends_on("py-bcolz@0.11.3:", type=("build", "run"))
depends_on("py-numexpr@2.4.3:", type=("build", "run"))
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