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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyGffutils(PythonPackage):
"""GFF and GTF file manipulation and interconversion
gffutils is a Python package for working with and manipulating the GFF and
GTF format files typically used for genomic annotations. Files are loaded
into a sqlite3 database, allowing much more complex manipulation of
hierarchical features (e.g., genes, transcripts, and exons) than is
possible with plain-text methods alone."""
homepage = "https://github.com/daler/gffutils"
pypi = "gffutils/gffutils-0.10.1.tar.gz"
maintainers("dorton21")
license("MIT")
version("0.10.1", sha256="a8fc39006d7aa353147238160640e2210b168f7849cb99896be3fc9441e351cb")
depends_on("py-setuptools", type="build")
depends_on("py-pyfaidx@0.5.5.2:", type=("build", "run"))
depends_on("py-six@1.12.0:", type=("build", "run"))
depends_on("py-argh@0.26.2:", type=("build", "run"))
depends_on("py-argcomplete@1.9.4:", type=("build", "run"))
depends_on("py-simplejson", type=("build", "run"))
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