var/spack/repos/builtin/packages/py-methylcode/package.py


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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class PyMethylcode(PythonPackage):
    """MethylCoder is a single program that takes of bisulfite-treated
    reads and outputs per-base methylation data."""

    homepage = "https://github.com/brentp/methylcode"
    git = "https://github.com/brentp/methylcode.git"

    version("master", branch="master")

    depends_on("python@2.6:2.8", type=("build", "run"))
    depends_on("py-setuptools", type="build")
    depends_on("py-numpy")
    depends_on("py-pyfasta")
    depends_on("py-bsddb3")
    depends_on("bowtie")