1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyMikado(PythonPackage):
"""Mikado is a lightweight Python3 pipeline whose purpose is to facilitate
the identification of expressed loci from RNA-Seq data * and to select
the best models in each locus."""
homepage = "https://github.com/EI-CoreBioinformatics/mikado"
pypi = "Mikado/Mikado-1.2.4.tar.gz"
version('1.2.4', sha256='c0485dba3b7c285599809e058c83f33b5efa9522d20d9f980423410604207f61')
depends_on('py-setuptools', type='build')
depends_on('py-wheel@0.28.0:', type='build')
depends_on('py-pyyaml', type=('build', 'run'))
depends_on('py-jsonschema', type=('build', 'run'))
depends_on('py-cython@0.25:', type='build')
depends_on('py-numpy', type=('build', 'run'))
depends_on('py-networkx@1.10:', type=('build', 'run'))
depends_on('py-sqlalchemy@1:', type=('build', 'run'))
depends_on('py-sqlalchemy-utils', type=('build', 'run'))
depends_on('py-biopython@1.66:', type=('build', 'run'))
depends_on('py-intervaltree', type=('build', 'run'))
depends_on('py-nose', type=('build', 'run'))
depends_on('py-pyfaidx', type=('build', 'run'))
depends_on('py-scikit-learn@0.17.0:', type=('build', 'run'))
depends_on('py-scipy@0.15.0:', type=('build', 'run'))
depends_on('py-python-magic', type=('build', 'run'))
depends_on('py-drmaa', type=('build', 'run'))
depends_on('snakemake', type=('build', 'run'))
depends_on('py-docutils@:0.13.0,0.13.2:', type=('build', 'run'))
depends_on('py-tabulate', type=('build', 'run'))
depends_on('py-ujson', type=('build', 'run'))
depends_on('py-simplejson', type=('build', 'run'))
depends_on('python@3.4:', type=('build', 'run'))
depends_on('py-typing', when='^python@:3.4', type=('build', 'run'))
|
