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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyMisopy(PythonPackage):
"""MISO (Mixture of Isoforms) is a probabilistic framework that
quantitates the expression level of alternatively spliced genes from
RNA-Seq data, and identifies differentially regulated isoforms or exons
across samples."""
homepage = "http://miso.readthedocs.io/en/fastmiso/"
url = "https://pypi.io/packages/source/m/misopy/misopy-0.5.4.tar.gz"
version('0.5.4', 'fe0c9c2613304defbdead12ea99e4194')
depends_on('py-setuptools', type='build')
depends_on('python@2.6:', type=('build', 'run'))
depends_on('py-numpy@1.5.0:', type=('build', 'run'))
depends_on('py-scipy@0.9.0:', type=('build', 'run'))
depends_on('py-pysam@0.6.0:', type=('build', 'run'))
depends_on('py-matplotlib', type=('build', 'run'))
depends_on('samtools')
depends_on('bedtools2')
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