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##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class PyPybedtools(PythonPackage):
"""pybedtools wraps and extends BEDTools and offers
feature-level manipulations from within Python."""
homepage = "http://daler.github.io/pybedtools"
url = "https://pypi.io/packages/source/p/pybedtools/pybedtools-0.7.10.tar.gz"
version('0.7.10', 'f003c67e22c48b77f070538368ece70c')
version('0.6.9', 'b7df049036422d8c6951412a90e83dca')
depends_on('py-setuptools', type='build')
depends_on('bedtools2', type=('build', 'run'))
depends_on('py-numpy', type=('build', 'run'))
depends_on('py-pandas', type=('build', 'run'))
depends_on('py-pysam@0.8.1:', type=('build', 'run'), when='@0.7.0:')
depends_on('py-pysam@0.7.7', type=('build', 'run'), when='@0.6.9')
depends_on('py-six', type=('build', 'run'))
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