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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import glob
import os
from spack.package import *
class PyScipy(PythonPackage):
"""SciPy (pronounced "Sigh Pie") is a Scientific Library for Python.
It provides many user-friendly and efficient numerical routines such
as routines for numerical integration and optimization."""
homepage = "https://www.scipy.org/"
pypi = "scipy/scipy-1.10.1.tar.gz"
git = "https://github.com/scipy/scipy.git"
maintainers("adamjstewart", "rgommers")
version("master", branch="master")
version("1.11.2", sha256="b29318a5e39bd200ca4381d80b065cdf3076c7d7281c5e36569e99273867f61d")
version("1.11.1", sha256="fb5b492fa035334fd249f0973cc79ecad8b09c604b42a127a677b45a9a3d4289")
version("1.11.0", sha256="f9b0248cb9d08eead44cde47cbf6339f1e9aa0dfde28f5fb27950743e317bd5d")
version("1.10.1", sha256="2cf9dfb80a7b4589ba4c40ce7588986d6d5cebc5457cad2c2880f6bc2d42f3a5")
version("1.10.0", sha256="c8b3cbc636a87a89b770c6afc999baa6bcbb01691b5ccbbc1b1791c7c0a07540")
version("1.9.3", sha256="fbc5c05c85c1a02be77b1ff591087c83bc44579c6d2bd9fb798bb64ea5e1a027")
version("1.9.2", sha256="99e7720caefb8bca6ebf05c7d96078ed202881f61e0c68bd9e0f3e8097d6f794")
version("1.9.1", sha256="26d28c468900e6d5fdb37d2812ab46db0ccd22c63baa095057871faa3a498bc9")
version("1.9.0", sha256="c0dfd7d2429452e7e94904c6a3af63cbaa3cf51b348bd9d35b42db7e9ad42791")
version("1.8.1", sha256="9e3fb1b0e896f14a85aa9a28d5f755daaeeb54c897b746df7a55ccb02b340f33")
version("1.8.0", sha256="31d4f2d6b724bc9a98e527b5849b8a7e589bf1ea630c33aa563eda912c9ff0bd")
version("1.7.3", sha256="ab5875facfdef77e0a47d5fd39ea178b58e60e454a4c85aa1e52fcb80db7babf")
version("1.7.2", sha256="fa2dbabaaecdb502641b0b3c00dec05fb475ae48655c66da16c9ed24eda1e711")
version("1.7.1", sha256="6b47d5fa7ea651054362561a28b1ccc8da9368a39514c1bbf6c0977a1c376764")
version("1.7.0", sha256="998c5e6ea649489302de2c0bc026ed34284f531df89d2bdc8df3a0d44d165739")
version("1.6.3", sha256="a75b014d3294fce26852a9d04ea27b5671d86736beb34acdfc05859246260707")
version("1.6.2", sha256="e9da33e21c9bc1b92c20b5328adb13e5f193b924c9b969cd700c8908f315aa59")
version("1.6.1", sha256="c4fceb864890b6168e79b0e714c585dbe2fd4222768ee90bc1aa0f8218691b11")
version("1.6.0", sha256="cb6dc9f82dfd95f6b9032a8d7ea70efeeb15d5b5fd6ed4e8537bb3c673580566")
version("1.5.4", sha256="4a453d5e5689de62e5d38edf40af3f17560bfd63c9c5bd228c18c1f99afa155b")
version("1.5.3", sha256="ddae76784574cc4c172f3d5edd7308be16078dd3b977e8746860c76c195fa707")
version("1.5.2", sha256="066c513d90eb3fd7567a9e150828d39111ebd88d3e924cdfc9f8ce19ab6f90c9")
version("1.5.1", sha256="039572f0ca9578a466683558c5bf1e65d442860ec6e13307d528749cfe6d07b8")
version("1.5.0", sha256="4ff72877d19b295ee7f7727615ea8238f2d59159df0bdd98f91754be4a2767f0")
version("1.4.1", sha256="dee1bbf3a6c8f73b6b218cb28eed8dd13347ea2f87d572ce19b289d6fd3fbc59")
version("1.4.0", sha256="31f7cfa93b01507c935c12b535e24812594002a02a56803d7cd063e9920d25e8")
version("1.3.3", sha256="64bf4e8ae0db2d42b58477817f648d81e77f0b381d0ea4427385bba3f959380a")
version("1.3.2", sha256="a03939b431994289f39373c57bbe452974a7da724ae7f9620a1beee575434da4")
version("1.3.1", sha256="2643cfb46d97b7797d1dbdb6f3c23fe3402904e3c90e6facfe6a9b98d808c1b5")
version("1.3.0", sha256="c3bb4bd2aca82fb498247deeac12265921fe231502a6bc6edea3ee7fe6c40a7a")
version("1.2.3", sha256="ecbe6413ca90b8e19f8475bfa303ac001e81b04ec600d17fa7f816271f7cca57")
version("1.2.2", sha256="a4331e0b8dab1ff75d2c67b5158a8bb9a83c799d7140094dda936d876c7cfbb1")
version("1.2.1", sha256="e085d1babcb419bbe58e2e805ac61924dac4ca45a07c9fa081144739e500aa3c")
version("1.1.0", sha256="878352408424dffaa695ffedf2f9f92844e116686923ed9aa8626fc30d32cfd1")
# Based on wheel availability on PyPI
depends_on("python@3.9:3.12", when="@1.11:", type=("build", "link", "run"))
depends_on("python@3.8:3.11", when="@1.9.2:1.10", type=("build", "link", "run"))
depends_on("python@3.8:3.10", when="@1.8:1.9.1", type=("build", "link", "run"))
depends_on("python@:3.10", when="@1.7.2:1.7", type=("build", "link", "run"))
depends_on("python@:3.9", when="@1.5.4:1.7.1", type=("build", "link", "run"))
depends_on("python@:3.8", when="@1.3.2:1.5.3", type=("build", "link", "run"))
depends_on("python@:3.7", when="@1.1:1.3.1", type=("build", "link", "run"))
# TODO: remove once pip build supports BLAS/LAPACK specification
# https://github.com/mesonbuild/meson-python/pull/167
depends_on("py-build", when="@1.9:", type="build")
depends_on("py-meson-python@0.12.1:0.13", when="@1.11:", type="build")
depends_on("py-meson-python@0.11:0.12", when="@1.10.1:1.10", type="build")
depends_on("py-meson-python@0.11", when="@1.10.0", type="build")
depends_on("py-meson-python@0.9:", when="@1.9.2:1.9", type="build")
depends_on("py-meson-python@0.8.1:", when="@1.9.1", type="build")
depends_on("py-meson-python@0.7", when="@1.9.0", type="build")
depends_on("meson@0.62.2", when="@1.9.0:1.9.1", type="build")
depends_on("py-cython@0.29.35:2", when="@1.11:", type="build")
depends_on("py-cython@0.29.32:2", when="@1.9.2:", type="build")
depends_on("py-cython@0.29.21:2", when="@1.9:", type="build")
depends_on("py-cython@0.29.18:2", when="@1.7:", type="build")
depends_on("py-pybind11@2.10.4:2.10", when="@1.11:", type=("build", "link"))
depends_on("py-pybind11@2.10.1", when="@1.10", type=("build", "link"))
depends_on("py-pybind11@2.4.3:2.10", when="@1.9.1:1.9", type=("build", "link"))
depends_on("py-pybind11@2.4.3:2.9", when="@1.9.0", type=("build", "link"))
depends_on("py-pybind11@2.4.3:2.8", when="@1.8", type=("build", "link"))
depends_on("py-pybind11@2.4.3:2.7", when="@1.7.2:1.7", type=("build", "link"))
depends_on("py-pybind11@2.4.3:2.6", when="@1.6.2:1.7.1", type=("build", "link"))
depends_on("py-pybind11@2.4.3:", when="@1.5:1.6.1", type=("build", "link"))
depends_on("py-pybind11@2.4.0:", when="@1.4.1:1.4", type=("build", "link"))
depends_on("py-pybind11@2.2.4:", when="@1.4.0", type=("build", "link"))
depends_on("py-pythran@0.12:0.13", when="@1.11:", type="build")
depends_on("py-pythran@0.12", when="@1.10", type="build")
depends_on("py-pythran@0.9.12:0.12", when="@1.9.2:1.9", type="build")
depends_on("py-pythran@0.9.12:0.11", when="@1.9.0:1.9.1", type="build")
depends_on("py-pythran@0.10", when="@1.8", type="build")
depends_on("py-pythran@0.9.12:0.9", when="@1.7.2:1.7", type="build")
depends_on("py-pythran@0.9.11", when="@1.7.0:1.7.1", type="build")
depends_on("py-wheel@:0.40", when="@1.11:", type="build")
depends_on("py-wheel@:0.38", when="@1.10", type="build")
depends_on("py-wheel@:0.37", when="@:1.9", type="build")
depends_on("pkgconfig", when="@1.9:", type="build")
depends_on("py-setuptools", when="@:1.8", type="build")
depends_on("py-setuptools@:59", when="@1.8", type="build")
depends_on("py-setuptools@:57", when="@1.7", type="build")
depends_on("py-setuptools@:51.0.0", when="@1.6", type="build")
depends_on("py-numpy@1.21.6:1.27+blas+lapack", when="@1.11:", type=("build", "link", "run"))
depends_on("py-numpy@1.19.5:1.26+blas+lapack", when="@1.10", type=("build", "link", "run"))
depends_on("py-numpy@1.18.5:1.25+blas+lapack", when="@1.9", type=("build", "link", "run"))
depends_on("py-numpy@1.17.3:1.24+blas+lapack", when="@1.8", type=("build", "link", "run"))
depends_on(
"py-numpy@1.16.5:1.22+blas+lapack", when="@1.6.2:1.7", type=("build", "link", "run")
)
depends_on("py-numpy@1.16.5:+blas+lapack", when="@1.6:1.6.1", type=("build", "link", "run"))
depends_on("py-numpy@1.14.5:+blas+lapack", when="@1.5.0:1.5", type=("build", "link", "run"))
depends_on("py-numpy@1.13.3:+blas+lapack", when="@1.3:1.4", type=("build", "link", "run"))
depends_on("py-numpy@1.8.2:+blas+lapack", when="@:1.2", type=("build", "link", "run"))
depends_on("py-pytest", type="test")
# NOTE: scipy should use the same BLAS/LAPACK as numpy.
# For scipy 1.8 and older, this is achieved by calling the set_blas_lapack()
# and setup_build_environment() from numpy in the scipy spec.
depends_on("blas")
depends_on("lapack")
# https://docs.scipy.org/doc/scipy/dev/toolchain.html#other-libraries
depends_on("lapack@3.7.1:", when="@1.9:")
depends_on("lapack@3.4.1:", when="@1.2:")
# https://docs.scipy.org/doc/scipy/dev/toolchain.html#compilers
conflicts("%gcc@:7", when="@1.10:")
conflicts("%gcc@:4.7", when="@:1.9")
conflicts("%apple-clang@:9", when="@1.10:")
conflicts("%msvc@:19.19", when="@1.10:")
# https://github.com/scipy/scipy/pull/11324
conflicts("@1.4.0:1.4.1", when="target=ppc64le:")
# https://github.com/mesonbuild/meson/pull/10909#issuecomment-1282241479
# Intel OneAPI ifx claims to support -fvisibility, but this does not work.
# Meson adds this flag for all Python extensions which include Fortran code.
conflicts("%oneapi@:2023.0", when="@1.9:")
# https://github.com/scipy/scipy/issues/12860
patch(
"https://git.sagemath.org/sage.git/plain/build/pkgs/scipy/patches/extern_decls.patch?id=711fe05025795e44b84233e065d240859ccae5bd",
sha256="5433f60831cb554101520a8f8871ac5a32c95f7a971ccd68b69049535b106780",
when="@1.2:1.5.3",
)
patch("scipy-clang.patch", when="@1.5.0:1.6.3 %clang")
@property
def archive_files(self):
return [join_path(self.stage.source_path, "build", "meson-logs", "meson-log.txt")]
@run_before("install")
def set_blas_lapack(self):
# Pick up BLAS/LAPACK from numpy
if self.spec.satisfies("@:1.8"):
self.spec["py-numpy"].package.set_blas_lapack()
@run_before("install")
def set_fortran_compiler(self):
if self.compiler.f77 is None or self.compiler.fc is None:
raise InstallError(
"py-scipy requires Fortran compilers. Configure Fortran compiler to proceed."
)
if self.spec.satisfies("%fj"):
with open("setup.cfg", "w") as f:
f.write("[config_fc]\n")
f.write("fcompiler = fujitsu\n")
elif self.spec.satisfies("%intel") or self.spec.satisfies("%oneapi"):
if self.spec.satisfies("target=x86:"):
with open("setup.cfg", "w") as f:
f.write("[config_fc]\n")
f.write("fcompiler = intel\n")
elif self.spec.satisfies("target=x86_64:"):
with open("setup.cfg", "w") as f:
f.write("[config_fc]\n")
f.write("fcompiler = intelem\n")
def setup_build_environment(self, env):
# https://github.com/scipy/scipy/issues/9080
env.set("F90", spack_fc)
# https://github.com/scipy/scipy/issues/11611
if self.spec.satisfies("@:1.4 %gcc@10:"):
env.set("FFLAGS", "-fallow-argument-mismatch")
if self.spec.satisfies("^py-numpy@1.16:1.17"):
env.set("NPY_DISTUTILS_APPEND_FLAGS", "1")
# https://github.com/scipy/scipy/issues/14935
if self.spec.satisfies("%intel ^py-pythran"):
env.set("SCIPY_USE_PYTHRAN", "0")
# Pick up BLAS/LAPACK from numpy
if self.spec.satisfies("@:1.8"):
self.spec["py-numpy"].package.setup_build_environment(env)
# TODO: remove once pip build supports BLAS/LAPACK specification
# https://github.com/mesonbuild/meson-python/pull/167
@when("@1.9:")
def install(self, spec, prefix):
blas = spec["blas"].libs.names[0]
lapack = spec["lapack"].libs.names[0]
if spec["blas"].name in ["intel-mkl", "intel-parallel-studio", "intel-oneapi-mkl"]:
blas = "mkl-dynamic-lp64-seq"
if spec["lapack"].name in ["intel-mkl", "intel-parallel-studio", "intel-oneapi-mkl"]:
lapack = "mkl-dynamic-lp64-seq"
if spec["blas"].name in ["blis", "amdblis"]:
blas = "blis"
if "armpl" in blas:
if "_mp" in blas:
blas = "armpl-dynamic-lp64-omp"
else:
blas = "armpl-dynamic-lp64-seq"
if "armpl" in lapack:
if "_mp" in lapack:
lapack = "armpl-dynamic-lp64-omp"
else:
lapack = "armpl-dynamic-lp64-seq"
args = [
"setup",
"build",
"-Dblas=" + blas,
"-Dlapack=" + lapack,
"--prefix=" + join_path(os.getcwd(), "build-install"),
"-Ddebug=false",
"-Doptimization=2",
]
meson = which("meson")
meson(*args)
args = [
"-m",
"build",
"--wheel",
"-Cbuilddir=build",
"--no-isolation",
"--skip-dependency-check",
"-Ccompile-args=-j%s" % make_jobs,
".",
]
python(*args)
args = std_pip_args + ["--prefix=" + prefix, glob.glob(join_path("dist", "scipy*.whl"))[0]]
pip(*args)
@run_after("install")
@on_package_attributes(run_tests=True)
def install_test(self):
with working_dir("spack-test", create=True):
python("-c", 'import scipy; scipy.test("full", verbose=2)')
|
