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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class RA4base(RPackage):
    """Automated Affymetrix Array Analysis Base Package.

    Base utility functions are available for the Automated Affymetrix Array
    Analysis set of packages."""

    bioc = "a4Base"

    version("1.48.0", commit="26d5793de3163091125feeed1de82e5406777b60")
    version("1.46.0", commit="be70ae723bb6031cdf9540d62dc6113761074e88")
    version("1.44.0", commit="9ae69e03118c7b14df0e6c9e3b25362b09f25bbe")
    version("1.42.0", commit="d7296e2792020e9c5b1c19101104326ee8bebfe6")
    version("1.38.0", commit="4add242fa9c62795aca5b0dfca34a43484c5aa82")
    version("1.32.0", commit="8a1e15d25494c54db8c1de5dbbd69e628569e3d7")
    version("1.30.0", commit="fc370b2bd8286acc1e42a10344d91974f5b94229")
    version("1.28.0", commit="3918a9ebafa065027c29620ee4d83789cb02f932")
    version("1.26.0", commit="9b8ee4a8be90f5035a4b105ecebb8bb5b50cd0d9")
    version("1.24.0", commit="f674afe424a508df2c8ee6c87a06fbd4aa410ef6")

    depends_on("r-a4preproc", type=("build", "run"))
    depends_on("r-a4core", type=("build", "run"))
    depends_on("r-biobase", type=("build", "run"))
    depends_on("r-annaffy", type=("build", "run"))
    depends_on("r-mpm", type=("build", "run"))
    depends_on("r-genefilter", type=("build", "run"))
    depends_on("r-limma", type=("build", "run"))
    depends_on("r-multtest", type=("build", "run"))
    depends_on("r-glmnet", type=("build", "run"))
    depends_on("r-gplots", type=("build", "run"))

    depends_on("r-annotationdbi", type=("build", "run"), when="@:1.32.0")