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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class RA4classif(RPackage):
    """Automated Affymetrix Array Analysis Classification Package.

    Functionalities for classification of Affymetrix microarray data,
    integrating within the Automated Affymetrix Array Analysis set of
    packages."""

    bioc = "a4Classif"

    version('1.42.0', commit='820854a7ca9ed0c295479a25b7e3375c6d01d0b5')
    version('1.38.0', commit='c4d058813efb835774813b2d69c52912162f8e75')
    version('1.32.0', commit='aa4f22df2da54b71e1a238d2b9cbcb3afa6f7f88')
    version('1.30.0', commit='b62841bff2f8894a3011a4e74afc37076d1322a3')
    version('1.28.0', commit='3464011f6c3ddb41b78acc47e775539034287be7')
    version('1.26.0', commit='bc4018c3c441e1840bb3e2959c07611489439a50')
    version('1.24.0', commit='ca06bf274c87a73fc12c29a6eea4b90289fe30b1')

    depends_on('r-a4core', type=('build', 'run'))
    depends_on('r-a4preproc', type=('build', 'run'))
    depends_on('r-biobase', type=('build', 'run'), when='@1.38.0:')
    depends_on('r-rocr', type=('build', 'run'))
    depends_on('r-pamr', type=('build', 'run'))
    depends_on('r-glmnet', type=('build', 'run'))
    depends_on('r-varselrf', type=('build', 'run'))

    depends_on('r-mlinterfaces', type=('build', 'run'), when='@:1.32.0')