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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RAcde(RPackage):
"""This package provides a multivariate inferential analysis method
for detecting differentially expressed genes in gene expression data.
It uses artificial components, close to the data's principal
components but with an exact interpretation in terms of differential
genetic expression, to identify differentially expressed genes while
controlling the false discovery rate (FDR). The methods on this
package are described in the vignette or in the article
'Multivariate Method for Inferential Identification of
Differentially Expressed Genes in Gene Expression Experiments' by
J. P. Acosta, L. Lopez-Kleine and S. Restrepo
(2015, pending publication)."""
homepage = "https://www.bioconductor.org/packages/acde/"
url = "https://www.bioconductor.org/packages/release/bioc/src/contrib/acde_1.6.0.tar.gz"
version('1.6.0', 'e92ce91f75bab3bb1d79995bec1b42cc')
depends_on('r-boot', type=('build', 'run'))
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