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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RAffycoretools(RPackage):
"""Functions useful for those doing repetitive analyses with Affymetrix
GeneChips
Various wrapper functions that have been written to streamline the more
common analyses that a core Biostatistician might see."""
homepage = "https://bioconductor.org/packages/affycoretools"
git = "https://git.bioconductor.org/packages/affycoretools.git"
version('1.62.0', commit='c9779e4da648fd174c9bd575c6020be1c03047c4')
version('1.56.0', commit='71eab04056a8d696470420a600b14900186be898')
version('1.54.0', commit='1e1f9680bc3e1fa443f4a81ce5ab81349959b845')
version('1.52.2', commit='2f98c74fad238b94c1e453b972524ab7b573b0de')
version('1.50.6', commit='4be92bcb55d7bace2a110865b7530dcfac14e76e')
version('1.48.0', commit='e0d52e34eead1ac45d3e60c59efd940e4889eb99')
depends_on('r+X', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-affy', type=('build', 'run'))
depends_on('r-limma', type=('build', 'run'))
depends_on('r-gostats', type=('build', 'run'))
depends_on('r-gcrma', type=('build', 'run'))
depends_on('r-xtable', type=('build', 'run'))
depends_on('r-annotationdbi', type=('build', 'run'))
depends_on('r-ggplot2', type=('build', 'run'))
depends_on('r-gplots', type=('build', 'run'))
depends_on('r-oligoclasses', type=('build', 'run'))
depends_on('r-reportingtools', type=('build', 'run'))
depends_on('r-hwriter', type=('build', 'run'))
depends_on('r-lattice', type=('build', 'run'))
depends_on('r-s4vectors', type=('build', 'run'))
depends_on('r-edger', type=('build', 'run'))
depends_on('r-rsqlite', type=('build', 'run'))
depends_on('r-biocgenerics', type=('build', 'run'))
depends_on('r-dbi', when='@1.50.6:', type=('build', 'run'))
depends_on('r-glimma', when='@1.62.0:', type=('build', 'run'))
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