summaryrefslogtreecommitdiff
path: root/var/spack/repos/builtin/packages/r-affyexpress/package.py
blob: b49240495d3fdf54aeba1f9ec4cf67b7d35425bf (plain) (blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class RAffyexpress(RPackage):
    """Affymetrix Quality Assessment and Analysis Tool.

       The purpose of this package is to provide a comprehensive and easy-to-
       use tool for quality assessment and to identify differentially expressed
       genes in the Affymetrix gene expression data."""

    homepage = "https://bioconductor.org/packages/AffyExpress"
    git      = "https://git.bioconductor.org/packages/AffyExpress.git"

    version('1.50.0', commit='8b98703b63396df9692afb0e15b594658125cc96')
    version('1.48.0', commit='dbaed516b7529ef4f7588aafaf3c5f1d53a9bb92')
    version('1.46.0', commit='2add4a4436e21aa20f1ededbfd5f1365a3d28c85')
    version('1.44.0', commit='7517bc8b363ceb107d5dca66dd74f94edefde52a')
    version('1.42.0', commit='f5c5cf6173f4419e25f4aeff5e6b705a40abc371')

    depends_on('r@2.10:', type=('build', 'run'))
    depends_on('r-affy@1.23.4:', type=('build', 'run'))
    depends_on('r-limma', type=('build', 'run'))