1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
|
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RAffyilm(RPackage):
"""Linear Model of background subtraction and the Langmuir isotherm
affyILM is a preprocessing tool which estimates gene expression levels
for Affymetrix Gene Chips. Input from physical chemistry is employed to
first background subtract intensities before calculating concentrations
on behalf of the Langmuir model."""
homepage = "https://bioconductor.org/packages/affyILM"
git = "https://git.bioconductor.org/packages/affyILM.git"
version('1.42.0', commit='b97b29786b866de38802ebbb995169be91e90942')
version('1.36.0', commit='619ced931ba72860ce4cb41c841bbca1636a1132')
version('1.34.0', commit='2c02ed2d8fa9a9585d41cf4db0b75d0a07ad8564')
version('1.32.0', commit='860f2ddada80435d309ba334eff3fab503817755')
version('1.30.0', commit='c07d91ae52a2a48f0a5f212c3ecf3243741bee13')
version('1.28.0', commit='307bee3ebc599e0ea4a1d6fa8d5511ccf8bef7de')
depends_on('r@2.10.0:', type=('build', 'run'))
depends_on('r-gcrma', type=('build', 'run'))
depends_on('r-affxparser@1.16.0:', type=('build', 'run'))
depends_on('r-affy', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
|
